mantispy.tl.similarity

mantispy.tl.similarity(adata, metric='cosine', use_rep=None, key_added='similarity', copy=False)

Store pairwise profile similarity in obsp[key_added].

Return type:

AnnData | None

Notes

The result is dense and quadratic in the number of profiles, so this expects well- or perturbation-level profiles rather than single cells.