References

References#

[ASE+24]

John Arevalo, Ellen Su, Jessica D. Ewald, Robert van Dijk, Anne E. Carpenter, and Shantanu Singh. Evaluating batch correction methods for image-based cell profiling. Nature Communications, Aug 2024. URL: http://dx.doi.org/10.1038/s41467-024-50613-5, doi:10.1038/s41467-024-50613-5.

[CCG+24]

Srinivas Niranj Chandrasekaran, Beth A. Cimini, Amy Goodale, Lisa Miller, Maria Kost-Alimova, Nasim Jamali, John G. Doench, Briana Fritchman, Adam Skepner, Michelle Melanson, Alexandr A. Kalinin, John Arevalo, Marzieh Haghighi, Juan C. Caicedo, Daniel Kuhn, Desiree Hernandez, James Berstler, Hamdah Shafqat-Abbasi, David E. Root, Susanne E. Swalley, Sakshi Garg, Shantanu Singh, and Anne E. Carpenter. Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations. Nature Methods, 21(6):1114–1121, Apr 2024. URL: http://dx.doi.org/10.1038/s41592-024-02241-6, doi:10.1038/s41592-024-02241-6.

[VBH+23]

Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, Philipp Angerer, Volker Bergen, Pierre Boyeau, Maren Büttner, Gokcen Eraslan, David Fischer, Max Frank, Justin Hong, Michal Klein, Marius Lange, Romain Lopez, Mohammad Lotfollahi, Malte D. Luecken, Fidel Ramirez, Jeffrey Regier, Sergei Rybakov, Anna C. Schaar, Valeh Valiollah Pour Amiri, Philipp Weiler, Galen Xing, Bonnie Berger, Dana Pe'er, Aviv Regev, Sarah A. Teichmann, Francesca Finotello, F. Alexander Wolf, Nir Yosef, Oliver Stegle, and Fabian J. Theis and. The scverse project provides a computational ecosystem for single-cell omics data analysis. Nature Biotechnology, apr 2023. URL: https://doi.org/10.1038%2Fs41587-023-01733-8, doi:10.1038/s41587-023-01733-8.